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Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8r6u
Q-score: 0.565
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae330 Pubmed: 38709882 ]
- Rna primer tail-end (5 kDa, RNA from SFTS virus AH12)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*cp*up*up*up*gp*up*gp*u)-3') (8 kDa, RNA from SFTS virus AH12)
- Rna primer (6 kDa, RNA from SFTS virus AH12)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8r6w
Q-score: 0.44
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae330 Pubmed: 38709882 ]
- Rna (5'-r(*ap*cp*ap*cp*ap*gp*ap*gp*ap*cp*gp*cp*cp*cp*ap*g)-3') (6 kDa, RNA from SFTS virus AH12)
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*cp*up*up*up*gp*up*gp*u)-3') (8 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(*ap*cp*ap*c)-3') (5 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(*(m7g)*ap*ap*a)-3') (5 kDa, RNA from SFTS virus AH12)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8r6y
Q-score: 0.456
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae330 Pubmed: 38709882 ]
- Rna (5'-r(*ap*cp*ap*cp*ap*gp*ap*gp*ap*cp*gp*cp*cp*cp*ap*g)-3') (6 kDa, RNA from SFTS virus AH12)
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- 5'-o-[(s)-hydroxy{[(s)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine (483 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*ap*ap*ap*up*gp*u)-3') (6 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(p*ap*cp*a)-3') (918 Da, RNA from SFTS virus AH12)
- Rna (5'-r(*(m7g)*ap*ap*a)-3') (5 kDa, RNA from SFTS virus AH12)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)
Apo-structure of Lassa virus L protein (well-resolved polymerase core) [APO-CORE]
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 7och
Q-score: 0.538
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Apo-structure of Lassa virus L protein (well-resolved endonuclease) [APO-ENDO]
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7oe3
Q-score: 0.456
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Apo-structure of Lassa virus L protein (well-resolved alpha ribbon) [APO-RIBBON]
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 7oe7
Q-score: 0.314
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Lassa virus L protein bound to 3' promoter RNA (well-resolved polymerase core) [3END-CORE]
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7oea
Q-score: 0.51
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Magnesium ion (24 Da, Ligand)
- 3' vrna (5 kDa, RNA from Lassa mammarenavirus)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Lassa virus L protein bound to 3' promoter RNA (well-resolved endonuclease) [3END-ENDO]
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 7oeb
Q-score: 0.506
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Magnesium ion (24 Da, Ligand)
- 3' vrna (5 kDa, RNA from Lassa mammarenavirus)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Lassa virus L protein with endonuclease and C-terminal domains in close proximity [MID-LINK]
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ojj
Q-score: 0.448
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
Lassa virus L protein bound to the distal promoter duplex [DISTAL-PROMOTER]
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7ojk
Q-score: 0.374
Kouba T, Vogel D, Thorkelsson SR, Quemin ERJ, Williams HM, Milewski M, Busch C, Gunther S, Grunewald K, Rosenthal M, Cusack S
Nat Commun (2021) 12 pp. 7018-7018 [ Pubmed: 34857749 DOI: doi:10.1038/s41467-021-27305-5 ]
- 3' rna (2 kDa, RNA from Lassa mammarenavirus)
- Rna (Complex from Lassa mammarenavirus)
- Rna-directed rna polymerase l (Complex from Lassa mammarenavirus)
- 5' rna (3 kDa, RNA from Lassa mammarenavirus)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l lassa mammarenavirus (253 kDa, Complex)